Scaffold Ga0315912_10026894

Overview

Basic Information

• Taxon OID: 3300032157
• Scaffold ID: Ga0315912_10026894
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4661
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045167	Metagenome	153	Y
F080948	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315912_100268943	F080948	AGGAG	MQVKIHLRHAATLLLWFTSLAGVAQAVEFNETLKAPRAIAGAELKTHAESYSASFAKLRDASPLEMVANKALTVERVDLEWQLKRALEDKRPLEDLSAFGLVKQENGFRIDYNAFPQWQPFPEMLAELLPTMDLNVAIPQFVARGFRESDVATLRSYLEEHDLKAETAARTLPMAIGFSKVVKKYDKIKRPAGRDQVLAFLYQRGNIEAEVRRAWAEGLIRALDEQRVRILQSCFSEIQSTGYWGPDDVEAGVANLLALMRLPDYEQRATAEARGVAP
Ga0315912_100268944	F045167	GGAG	MNTSRFAIRSRVACLATVALMSLPQLATAVSMSTYVSTPSQWGTGSAYYHGHTVSASTPFSVLNAGGGFTVQCNHPAVLMMTGERALGSTTTGFDRNALMVTIPAQQPALRNISGWLQIPGGTFLSCNYRWTAFAEEGGYSIGFGGISTPIGNTSMREGGTVDFSMYRPPREDADGGCRP