NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315295_10620397

Scaffold Ga0315295_10620397


Overview

Basic Information
Taxon OID3300032156 Open in IMG/M
Scaffold IDGa0315295_10620397 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1095
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5367Long. (o)-110.4246Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010991Metagenome / Metatranscriptome296Y
F091914Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315295_106203971F010991N/AMQGKKDKKPSLNDVALKAGTDRNRVAAALRDDPDLPKAFKDKVKKAVEAVGYVKPPPNQHPNSKLDQEKADAIVDGIVQNKSITTIANEVGLDTETASKYIRGVKVPKDYPDNEEDWRNDVTGFLEVAIWKGTKRLAENSMHFIDDRSLPVAVAVLVDKLAATKGQPTSIHLNMTASVSHRDLMADLKDRDVTPVNDEQTHDLV
Ga0315295_106203972F091914N/AALDTLGGSEVPNPYRIDWCKDVRVDQFPTLWMPFAMDTQPGQLEYLSEDYAAAVRLSLAGVEHYSMLPKKPINHWGEYPFSFKPYAG

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