Scaffold Ga0302127_10184617

Overview

Basic Information

• Taxon OID: 3300032151
• Scaffold ID: Ga0302127_10184617
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB4_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 942
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 75.0007
  • Long. (^o): -150.0027
  • Depth (m): 81

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065938	Metagenome / Metatranscriptome	127	N
F077787	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302127_101846171	F065938	AGGAG	MYKRDQHYNEKISTENLYKELDTHYTGETDLVRNLMSISITEGLVETRHELSCANEELWSLNDFPE
Ga0302127_101846173	F077787	N/A	VVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV