Scaffold Ga0316201_10000770

Overview

Basic Information

• Taxon OID: 3300032136
• Scaffold ID: Ga0316201_10000770
• Source Dataset Name: Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19773
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (58.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7869
  • Long. (^o): -75.1074
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006785	Metagenome / Metatranscriptome	364	Y
F020000	Metagenome / Metatranscriptome	226	Y
F052478	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316201_1000077012	F020000	GGAGG	MANVGTTQIDRFTNTVEHTGNVMDALDEWFEVHAHSASYTFAANVTSEANFTLALEANFNGNGAWFTIDTGKTINTAGQYVYFYDGRPATKVRMRVASISSGTVSLTPHIVVGYHG
Ga0316201_100007702	F052478	N/A	MAGAMLILAGVLIGLYGLAVLLGDREPDGTVREGVAGAHKRRQSRK
Ga0316201_100007703	F006785	GGAG	MTGGEWTTKGRQREAREAEREQVRLEKRQLRDLRWAIERSTVKASDWQDLLTLHQMHGKEGPLQLWRELVPYWRDCQRVNRGADLPAELFPQATGLLTRNTEKAPATRVKAAKGSSRKVRSDAGKRQPSRKSGR