Scaffold Ga0315339_1027190

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315339_1027190

Scaffold Ga0315339_1027190

Overview

Basic Information
Taxon OID	3300032134 Open in IMG/M
Scaffold ID	Ga0315339_1027190 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2438
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.1202	Long. (^o)	-123.4856	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041257	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315339_10271903	F041257	AGGAG	MDDVVDPWSEQPDGPFDHERFKTLTVLVDTASQVTDLYAIKGFEGFTKRQADWACKLQSFFNLSNPLEALVLLLFTLWFSQNERFELEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGKERTSRVVAIAFGLLPEPIDVTSPGDVPPSPPRTE

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