Scaffold Ga0315336_1085027

Overview

Basic Information

• Taxon OID: 3300032132
• Scaffold ID: Ga0315336_1085027
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1432
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7507
  • Long. (^o): -122.0138
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054918	Metagenome	139	Y
F057670	Metagenome	136	N
F059068	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315336_10850273	F054918	GGAG	MPIDWEQLKPQLEDLAQDMALKHICRLCKKIIPGAHYRIAGEDGNYHIECYKQEDNDAQTTG
Ga0315336_10850274	F057670	AGGAGG	MTTENQQPRVRYRISINRLAKGQLQFDCTCELDAPVELIGPTHDQVPSSIALGKVQAAILLASDQLVAELQSRYPMALE
Ga0315336_10850277	F059068	N/A	CCEAVPLGGEVDESTIPYGGPSGFCSRCKDNCIFFVEDAGEPFDTQEEKRGER