Scaffold Ga0315336_1007045

Overview

Basic Information

• Taxon OID: 3300032132
• Scaffold ID: Ga0315336_1007045
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11072
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7507
  • Long. (^o): -122.0138
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046696	Metagenome / Metatranscriptome	151	N
F079939	Metagenome	115	N
F093730	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315336_100704514	F079939	N/A	MCDVIDRLEQQCVDIVLENHPGDSWVYTNDKYSFLDGMFVRGGVIKAVAEIKSRECPLGFHPKEMVGWNKMEAGRWASKSFRCPFYLFSYHPKSEVVAGYKITNEMGDFIRKFEVSDYGQNKNKDERETKTIRKTCWVENQEPSLLKRRGLRCIY
Ga0315336_100704516	F093730	N/A	MTTYVKCGDDGRWRIWVRSAAGESPAGTRLNRGGLFPYETICDHRDHAEATLQAGRLQEYIDDRDRVLLANRKKKQRWN
Ga0315336_10070454	F046696	N/A	MPKVDIPISALQVADEDGSMIVPAVGDAVSFTVEGAVESLGDEYAVVGMESVNGEPAYAEEVVDEAAAIEAPSRDDLIAEMEAIDAAEGL