Scaffold Ga0315277_11078570

Overview

Basic Information

• Taxon OID: 3300032118
• Scaffold ID: Ga0315277_11078570
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 725
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3566
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F029412	Metagenome	188	Y
F093500	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315277_110785701	F014495	N/A	QAAPLGRTYRVSSESVWPLRGLDGKTFAERRKEREQGK
Ga0315277_110785702	F009516	GAG	MFYPMGTLAIGEVGTMPATDKGAAKRTSRNVSQYGIRNGKCFMCRTINGITFITRLG
Ga0315277_110785703	F029412	AGGA	MINERIEALRKREAVCWDMSEVFLHAKDAHGLHDMGVEIQGIQWAIRELEGLLRE
Ga0315277_110785704	F093500	AGGA	MTDEEIDAFENYDQRAEATLAYRLMEHLAFRGLITDIEVSNLRFPPCELILDAEEAWDE