Scaffold Ga0315277_10040357

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315277_10040357

Scaffold Ga0315277_10040357

Overview

Basic Information
Taxon OID	3300032118 Open in IMG/M
Scaffold ID	Ga0315277_10040357 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5498
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (44.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5099	Long. (^o)	-110.3566	Alt. (m)		Depth (m)	103
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028171	Metagenome / Metatranscriptome	192	Y
F033776	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315277_1004035714	F033776	N/A	MITNANNRRTNGKGRNFTVNVRMSREEIEAARRLKDGNISMGLRWAVRYATGRNMQSIKLSTMLRSAAVLASELEVASHG
Ga0315277_1004035716	F028171	GGAGG	VSDHIRAKLEALITDSSMFNAGQQDERLRLCRLIDIRLEQLNQLDSHPHISARREELLNIRQALRDHR

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