NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10000006

Scaffold Ga0315277_10000006


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10000006 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)424416
Total Scaffold Genes467 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)324 (69.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050736Metagenome / Metatranscriptome145Y
F056130Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0315277_10000006193F056130N/AVKRLVVIPFFKDNRAVSYAVSAIIITVTTIALVLVAFFYAYQVLDRQRGMSEFEVMQKSFLAFDDALEDVAWKPGATRSTRFTAQYGYLQLIPSNKTISISATVNGVSKPLSNGTFPGKTGIVKYWLSTNYVSYDPNYESYILGNSSSVISGSAEGYGRSVVEQQTGWVTITLDYRVRTMRTAVINVTGTRTNYVDIWVIKVSMLVTNAWSYIHDFDLQARTLSVRTASYSFNNVSNQTTSVSVQIGTDPAQQVPISLVVPGSVVYNVVAANVQVNV
Ga0315277_10000006194F050736AGGAGLPAPAISHVILAGALIVAVFTVQVFYFYVVDNVYSDMVRRELNEITDYVADTVANLYFLANSTGTDQSLEKTLKLPLDVGGSSFNLEITNQSNYAQKVKAAVQGKSWLNVTSWLPPGLLLDVGKTAMIQSSGKTVVAGCQRVSSRVYVWIAYKE
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