Scaffold Ga0316218_1033460

Overview

Basic Information

• Taxon OID: 3300032117
• Scaffold ID: Ga0316218_1033460
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2345
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033290	Metagenome	177	Y
F074307	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316218_10334604	F033290	GAGG	MTKEEIIEMAQRCGLFGIRPYPDGTYSEALEDFAKLVAEKEREECAEICDGFYLSWIDVQGRYEFMGEGASECAGAIRARGQE
Ga0316218_10334606	F074307	N/A	MKIDFGETHLEKIDRLSKPHKWFAWYPVEISAHDFRWLEYVERTGKPSAYCDGLWFWRYKAIPKTVGGVLKEGRE