Scaffold Ga0315903_10183013

Overview

Basic Information

• Taxon OID: 3300032116
• Scaffold ID: Ga0315903_10183013
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1882
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003863	Metagenome	464	Y
F005558	Metagenome	396	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315903_101830131	F003863	GGAGG	MDSRQVSGVQAIHHRNYRRARDRALVRLSHLYADEYRRLLVEEREVDELEGKKWVGVIDNTRLTITTHTRANAVPDVAGR
Ga0315903_101830136	F031792	AGGA	MGYEPELNDPVFYAGEYEEAVKCFICGDQLDPDDIVWANMEGQIVKEGNDTTWCVVCLPSEGESNE
Ga0315903_101830137	F005558	GGAGG	MDSVMSWGELAELTHATQVEKFNFCMCEDNKGRENPYEDCPKDGM