NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315903_10170068

Scaffold Ga0315903_10170068


Overview

Basic Information
Taxon OID3300032116 Open in IMG/M
Scaffold IDGa0315903_10170068 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1975
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F006107Metagenome / Metatranscriptome381N
F018171Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0315903_101700682F005024AGGAGVRPVVNMTVDSSRFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGKPLGDVNRKSKKTGKRIGKSRLLRRVHLIAQAREAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKVIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVSTIYNTAMQKAMDDELIELTSHMTEAMLANGKVLEDNGIAIK
Ga0315903_101700683F006107GGAMNAVALRAEKAVADYLAAADWSGSGSGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPVQRVDLTNEVEVSVELQLSADDTDEADVLTTVQVLDNRILPLFDDAGASALDAPSNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATL
Ga0315903_101700684F018171N/AMANTQGSKYIFGSPATLALYDAAGALVVTGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPANTTSVANALLSAALPDVNGTCVITGAPVIEVGGYTDAINAATGNRWIYAGGGSIKTTATGKATGTITLKRYTNITATGAATAL
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