NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_10238676

Scaffold Ga0315902_10238676


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10238676 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1780
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005054Metagenome / Metatranscriptome413Y
F016967Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0315902_102386761F016967GGAMLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYEAAVLSRLTTNPQFKALFTKTMFDQINTDFGNYIDALARSKPKSLHHVYEWKRAGNKTARLFKLNKISEDGLSFRVNYEFLPSRSMVPGPTSKRRHMFANKASIMEAGKPLVIRPKNAERLVFEIDGETVFMPKGQSVTIRRP
Ga0315902_102386763F005054N/AVADENNIGSYVVNIPYQYTDRNRTLRVRWIYNISGNTVTKDDEVFVVTPYVDFNHVQDLGFSMDSSDPNYKSYKELIKSERYARKQIEQYTGQKFYLYDDLYLVYGYDSDVLPVPAKIYEIHELYARDILLLDTINNINNWNFPVEISESGYGIKINRAGMLDNTVYVANGLVPPSINDYSGVFQSGVAYKIQGRFGWEKVPDNVELAAVELMKDYFSKDTMWRNKYVKNISTFDWDFEYTGDAYTGTGNAYADNLLADYVLTTKVEII
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