Scaffold Ga0315905_10079580

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10079580
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3316
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F017132	Metagenome	242	Y
F041601	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100795801	F006935	N/A	MEKHYAKQVIQWAEDAKETLTIRKEIIMDDDTTDEQLGMIIRMMYRAKVETQNETILKTKQNSGL
Ga0315905_100795804	F017132	N/A	MIRKIETAKVGEDLYEIVKKLPIQRFTRELTGERADTLKKYYGVEKILKFNQTMEYLFVNKIYEAEIVN
Ga0315905_100795807	F041601	N/A	MKQSILKLVNQIKEDLKAIDRDGVSHPLIDDVYERLELIEDAIYEDDAQADALSFEDDDY