Scaffold Ga0315905_10056389

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10056389
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3989
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F015702	Metagenome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100563895	F015702	GGAG	MTIREVELEYTVYNLVRLSEKVWGENAIEYLAGRLESVITYNQMKVLIDRLKEEASE
Ga0315905_100563898	F014590	GGAGG	VRTRHLQLVTHEHSVTIKTKSDVLSPFGPVRAGLTTSQITPEVQLMELLNSLENVVENLNYKSFTAYDTLVTAMEGVRVALSNTATDEVGTDANVRRVW
Ga0315905_100563899	F013279	AGGCGG	MQYDYRCPDCNTVLTIERSIHEEPREPSCFVCHISMVRKWDSPGVTFKGKGFYSNGG