Scaffold Ga0315905

Basic Information
Taxon OID	3300032092 Open in IMG/M
Scaffold ID	Ga0315905_10054473 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032092 Open in IMG/M

Scaffold ID

Ga0315905_10054473 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4060
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4060

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.8268

Long. (^o)

-83.1913

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031764	Metagenome / Metatranscriptome	181	Y
F034567	Metagenome / Metatranscriptome	174	Y
F058818	Metagenome / Metatranscriptome	134	N
F066775	Metagenome / Metatranscriptome	126	N
F082590	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100544734	F031764	N/A	MTNKHIQTAIQKVSTSFPSLFSREDVIKLLMDLSADMQDEDPKPKMDIDVLLTTFRQVLSEKDWDHLVDKDDVEMSIGYDNKIEVDRIAINEDYLIDEAVDALEAVYNALDEEAN
Ga0315905_100544735	F082590	AGG	MTERKRFSDTITEEQYDKLTSSTIDYERKPAYPDEIRSSINFNELHESVREIVSNLPIVEFPGSFFDYFLNGDQQFYLVTDKEKVFLVDTQGYDYARYVIRLKDFVILEKGDTMQMKSHPGMVEEIIGMLKHMDVDGETMEYILDNVGMKGQMLRQLFLKAHKDVLWDLTLEKKQLDKSI
Ga0315905_100544736	F034567	GAG	LINLFNYYDYVNHYGNRMFAIAGVKAMPARYCSILFTGSYEECMERLDPKGLEGSVEDIQKRVAFRS
Ga0315905_100544737	F058818	N/A	MIKELKKLQNILHDMAAELYGDLWIMNDKFWNSPTERQLREVTMQLIDLGVTIDPSDEQREAAKIIGKKFGFELPPED
Ga0315905_100544738	F066775	N/A	MTQIENLEIIKAALIEKRDAIHLACSALEKEAKEEKKAIFEELFADELVSYADVTVEVGYSGMYFKVGNKEIGSISERSYWRDEDTDKKYYFNTYATTCEDDFEFKRLIFNGKIALRMWTDMDSIKEAFMIPFSKKEELDILSKEYQILSAEIKQKEYQMQEARKQDIIDKLNGEGVEWTSGKSFEFNRQWTSYLVKKLKINKATKSGKTVDLEVTYAQHDWVYDEEDNGKRVEKEDRIATHEGIKMEYVMGNFRDLIYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315905_10054473

Overview

Ecosystem & Geography

Associated Families

Sequences