Scaffold Ga0315905_10028290

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10028290
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5688
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005114	Metagenome / Metatranscriptome	411	Y
F014117	Metagenome / Metatranscriptome	265	Y
F072093	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100282905	F014117	GAG	VKHFDNDTTAAIATAISGSSAVLHFANTWQPVFALILAIVGIVSGLFAIRYYAKKIDAIDGKGN
Ga0315905_100282906	F005114	N/A	MKAIQINTSVNLTSGLSIPSGSIVVIAEGYADVKSQKDGIIPAQIATFVFASVQALAEGKAPIQGIEDFNTTFSGLELSVADYETLAAETLLINAVYSALNAIYPAQVEIITL
Ga0315905_100282908	F072093	N/A	VNKQHNILPTSPVDVFFGLATQSGDLLITQDYDFLGFDGIAFIDSKEYNPTLIQKQSNRSLTSKVYKPTLSSKKIDYTLNLKTYNFAESKKQRNISQSAKSYVPSLSSKQNNITQSAKSYTPNLSETIIQDDFTFLVTQDLNYLTTQNGDYIGFDSAFIGYLLTTNNEFMRTQDGNFLEL