Scaffold Ga0315905_10025771

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10025771
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5968
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F024318	Metagenome	206	Y
F034898	Metagenome / Metatranscriptome	173	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1002577113	F024318	N/A	MKHYLYLGKFIKTPGDLAPKGVKSTYQTEKLTFEETFKRIWELANMKA
Ga0315905_100257712	F005529	N/A	MLPKSPLDYSLEIRYRLSSGEWSAWMNKGKGSFQSIEIVQRQIRLLAASYNGRDKEIRFEWNGWLCDFAGLPTGEVIALK
Ga0315905_100257717	F093880	GGTGG	MQAEDLHKMNDLNRDIWGMIVQAQQTKNWALMEVNLKRLYSLQKKYINLINIMDYEVKGTTLMLQDEIRVRNKFEKQWFKDVATRSGRYQEMKENIDKHFPT
Ga0315905_100257719	F034898	N/A	MTREEIITELNHRTTQKYLVYLALQEIMLDYYEDVSMLKFFDLDLQTKHKNMINALKKKSTQAYRYLEGYENGEATIKQFHEFVTLFEKLHKAIDLGGVVFHDCLNAVEDIIDSHEKKES