Scaffold Ga0315905_10017293

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10017293
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7299
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F063699	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1001729317	F063699	N/A	MTTVQQTIADFFSLAKSHKIRAYQIANEAGITRVTLSNWKTDRCEPTLSAWLLANDALDRLVTQKLDA
Ga0315905_100172932	F009516	GAG	MIYPMGTLELGEVGTMPATEKGSAKRTSRNVSQYGVRNGKTFRCHTVNGVTFITRLR
Ga0315905_100172933	F014495	GGAGG	MINPQQAAPLGLKHRVSSESAWPLRGVDGKTFAERFAQRKRDESKWQGQ