Scaffold Ga0315905_10008711

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10008711
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10267
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000871114	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRIGAKLFPFATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLQISLICTPSELDDGLRYLNFYQKQNSMYVAVI
Ga0315905_1000871116	F005584	AGGAGG	MAGTIDTSYFSTDLQFMIADMFQTVTGLASSAVSASVTDLATASELEIGGEVFRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0315905_1000871117	F008741	GAG	MKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLPQYHSVFDLVSYVKAGSKGDVLDLEIWPNKYEAYRKSRRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPESYNLVAAFGISQGFYRNPLDIITKARTDMGKDNFYVMTPPEIQIQGLSTYTASSVSEMAKAIRGAKDFWAINSTPIVLASVVRRGKPTGFFPQKNEWETDNIFDFEGMFRMD
Ga0315905_100087112	F093768	GAG	MAENPSPPKLPGKSQPLRTIRPTPDGVGISADYINSIIQRIEDLVQVAQSQKPIAGNNIQINFTAQGAVINATE