Scaffold Ga0315905_10005274

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10005274
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13172
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011223	Metagenome	293	Y
F014133	Metagenome	265	Y
F018705	Metagenome / Metatranscriptome	233	Y
F050192	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000527412	F050192	AGG	MLKREWKPWYPKHKGPVEPDRTILEMAVARELLATWAVIKDKALVDRHLAAVEKRYGVGAEQRVRQHMREIRRNECHA
Ga0315905_100052745	F018705	N/A	MTTPKLKPFLMRLHPATRELLDKAAVDQRRSISSLIDQSVRDQLSPRYGGLQFRLDRFVSRVVTND
Ga0315905_100052747	F011223	GGAG	MSKIKIQLVEDEEETPTVFERFWDNTMTFAKCVGAFAAICLAIGYFSSTEAQTKQCEPTKTVLARSIFK
Ga0315905_100052748	F014133	AGGAG	MSHLKNVWQWLMTHWVMPTPLELINEELVHAQRNKLRHESSQEYHAAIVAYNAARIKRLEARLAKQETTE