Scaffold Ga0315905_10000956

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10000956
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31419
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048854	Metagenome	147	Y
F050233	Metagenome / Metatranscriptome	145	Y
F057212	Metagenome	136	Y
F074591	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000095613	F074591	AGGA	MRNWNWTPRAKMIGLLLQAVAIIGIGWILFVGTWFALGGN
Ga0315905_100009562	F057212	GGA	MTTIISTTGNNATTIVADRGITSDLMHPDMPKLVEQNNWLIGVAGNARVCDQLQYAIEYPKPPAELLKKDYQDWFGWIVTKIIPLISDTIKDAEMDAECLLVTHGKSFLISENLSVLSAQPYWAIGSGAELALGALAQSQYNPDWHKNHDLSARRAIEVASMHDPNTRGTIDVWHSHHTGKIIKG
Ga0315905_1000095620	F048854	AGGAG	MDTAPKENKDNLIALRLNSEQMLAVRQWAHQHDTNISTVIRSAIELMTGAKQ
Ga0315905_1000095626	F050233	N/A	MGIIEAGQYAAAITAILVLFGMAIKWAIVKPIKVYIDQATYPIHPESNGGRSLNDVAQTVARIESKLKDVDERLIAVENHVTKPATRSKKSTA