NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10000447

Scaffold Ga0315905_10000447


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10000447 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45274
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (41.89%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F003748Metagenome / Metatranscriptome470Y
F004232Metagenome / Metatranscriptome447Y
F005388Metagenome / Metatranscriptome402N
F005740Metagenome / Metatranscriptome391N
F012111Metagenome283N
F071018Metagenome122N
F077447Metagenome / Metatranscriptome117N
F094883Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1000044727F005388N/AMACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFNTTSIEPTSAEEWSAITLASGNPGDNGGACNVTYSEVPVGFNSVTWSPERFALKGPLLCKDDLTYDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPFEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKFNVDCDDPLEKKGQHYAEFVHAAEPIFTNQGMTIIFRRCTGALTQIICS
Ga0315905_100004474F003748N/AMFTVNRRDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRMINQENVWFRVNQLVAATKHNVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARFEEYMVNGETKKTLRIKNMREVPITEVDSDDLDPKPF
Ga0315905_1000044749F012111AGGMSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGFSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSASPNLENPSNILDGWMVQAENFVVIQDGQSTPLIFNGSNLRRATIDEIKCGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLVFTPRYVFSIQAPVDRDTWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEILNIAENDQASLLWSGSAVVFDNRLLMTAQPRYNAEGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGDKFDNNIADGKKEIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGDASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0315905_1000044751F005740GAGMKLIVQDIRSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGENNGGCVGKQLVDRGTVVSYRDMSGGTNSYIRVYPGDASDVGKTIILQGVDASGNWIRTLSGGVWIDGEKLTLALPYVQSTKKFISLTGVIRQATNTSSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNEEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0315905_1000044752F094883N/AMAIGAAILGGAGISAVGSLLGGLFGGKKPKVPELKPIDFAAEQKQAIQQNIASLESATDLATKTTAAEQSQLEAQLRRAIPGYDQLIQQAGKNIGSALRGEVSQDVASQLQRSSAGRALSGGYGAGSGVGRNLAARDFGLTSMQIQNQGLAQAQNFIQQQRTFGMAQPFSVSSMFITPSQRIGALQEQQSRMYGRDLTAAQVAAAPSPMAQAAQTAFTNFGGTVGGALSQYGLSSALMSDYSNMMRQTPQIDVPNLMAPPPSMSAPSVRFGP
Ga0315905_1000044759F077447AGGAVQVEVISDDVEIRIGEMKWVGIAYTRDGKPKVYVRTKAEFEAKFTPVIEQAP
Ga0315905_1000044763F004232N/AMKSNQTIVAVDPGVGGGFAVSTSEGILLFPMPDSLTDTAQLLAGFKVADSHLWVEKVPKFVSKLTSSASMATLHENYGIVQGLGYAQGYALHRVEPKIWQEPLGLGGRKSCETGPEWKRKLKSKAQELYPNLDVTLKNCDALLILHYAMGGGR
Ga0315905_1000044771F001259AGGAGGMRDCAFIYVNKSNGLVRVESIDTAQNVDQSPEWNHVATINPHVVLESILRATIKDRNLIIKHLLK
Ga0315905_100004479F071018GGAGMPPLHHDADPNRSQVLAYIGENLGCDIGRSIRAFNSMRHPKSKVLVFDQVHRMWKGCDWLPSDENSKDAMILVEHRALERRVIAMDGELRKALKEIKRLNKQMADLYSDAETMEEAAEEAESDAKPQRNRRQSRPISSIESMVARAWA

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