Scaffold Ga0326721_10137174

Overview

Basic Information

• Taxon OID: 3300032080
• Scaffold ID: Ga0326721_10137174
• Source Dataset Name: Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1224
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Marine Airborne Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 36.36
  • Long. (^o): -97.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021173	Metagenome / Metatranscriptome	220	N
F061624	Metagenome / Metatranscriptome	131	Y
F064462	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326721_101371741	F061624	N/A	DPESAPALPAALEPALRELCEGLGWSVVHLVEDALPALDPVRRRVPGADDEGAFLAWVYTLAVDEALDRLAARGLLTPPATAVTAVRVTDPVLAGAAL
Ga0326721_101371742	F064462	AGGAGG	MSADPVVLAILVVLAALAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0326721_101371743	F021173	AGGGGG	MATPVIISLLVGLVAGGAFMAMWAANRIEEEGVRQFDRGFERGRWLTDITVAKAIEDQERDRRVGLLIAGSRPPSGQQPARPPGQEPRPSLLVLP