NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310890_10183293

Scaffold Ga0310890_10183293


Overview

Basic Information
Taxon OID3300032075 Open in IMG/M
Scaffold IDGa0310890_10183293 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1420
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010060Metagenome / Metatranscriptome309Y
F053383Metagenome141Y
F059999Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0310890_101832931F053383N/AMLRGHQIITHDRGVSRSENSADWMPAITQYKECDACLLVSDDPQMRGIADWFGNSGKPVWHRLADVPGVKLRYSRLLYVLVPVFLVIVGALVIKQPWFRDEAKPVPVVENPPIASEVTAPVVDKATDAGPKATAPVVDKAADAGPKADERNAKNCENELWRTADLLRFSVNRIQAGEETQSVVADMRQQGERVSAVCPELSDR
Ga0310890_101832932F059999GGCGGMSSAPVDDWTLVREKFEALVRERSDNIDDLLDDRFCKRFGQLVTHATDRARLRAHSENGRAQAGTATKIEIGRAQAGTRAKIVDDPVDDSELRGTVYALVIITGFCTAALAVGRVVGIN
Ga0310890_101832933F010060GGAGGMMETVLFTDHSIVVFAIVTGALALIFSVLGLATTSQTRSDIKHQLGVR
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