Scaffold Ga0308173_10054278

Overview

Basic Information

• Taxon OID: 3300032074
• Scaffold ID: Ga0308173_10054278
• Source Dataset Name: Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2935
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019717	Metagenome / Metatranscriptome	228	Y
F105411	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308173_100542781	F019717	N/A	VPVLLAIYRTGDAIEACFDDERQSMLELTPEPWPLIPFNGTDPESTLCAFRSLGGVLDVLAAARRVLDLVPGWEPINRKDERP
Ga0308173_100542785	F105411	N/A	EDRDRDIQSYIGWIYDRLKDHIPASAGAEELDRLIRKEVRSLFERIGWNGARKARFGEVGDLEDPSALGFERQVELADEVRACLKCIQKESRDLILEAFTLTEADLSRKGIRNELASRLGINRNTLDQRISRALGRIRERMRRLGME