Scaffold Ga0315315_10040508

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10040508
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4330
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062681	Metagenome	130	N
F087047	Metagenome	110	N
F093732	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_100405082	F087047	AGG	MNKFKERYIFSFNSDLHPDTVLWRYTDEAEYQANNHKTYKPKVSDLVIMNQDLAKQLKIDIRHELLSSILQDEAELPPKRL
Ga0315315_100405083	F062681	GGAG	MTEFTNAVEKQKGLQAYEEWAQQIRYVHSDGWEGTRTIVYNDGRRELYNLKNNQLIFEEPRKTRRRDLIDSNSFTKFLHRIGFYHE
Ga0315315_100405086	F093732	GGAG	MSKQGETIHKQLEEMLQDMSVQERLERTLARIEQYLAHADEVENLNHVNFINEIKYQLEDITNKEKS