NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315279_10534339

Scaffold Ga0315279_10534339


Overview

Basic Information
Taxon OID3300032070 Open in IMG/M
Scaffold IDGa0315279_10534339 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)758
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Portnoybacteria → Candidatus Portnoybacteria bacterium RBG_13_41_18(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5094Long. (o)-110.5094Alt. (m)Depth (m)88
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049360Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0315279_105343392F049360AGGAMVGLAVVVAVLTVVIFFGQAMIFRSTDMPPMSLLPAFIFLSFWDALSFGVGIALLIYLVLNYSKWPVKIRGSLLVLYLLALWFSVLNWVHDGAHMSGASPPNYVYLALVEYVFHVPWLIFAVTLALVVRQLVRTNKKQA

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