Scaffold Ga0315279_10000477

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315279_10000477

Scaffold Ga0315279_10000477

Overview

Basic Information
Taxon OID	3300032070 Open in IMG/M
Scaffold ID	Ga0315279_10000477 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	79554
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (86.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5094	Long. (^o)	-110.5094	Alt. (m)		Depth (m)	88
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066379	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315279_1000047713	F066379	AGGAGG	MCGSSRCLRISVFFISSIVLLAAAWSRAASGGDSANYVLTEDALNKMLGALSDLRSKGLPISVGGGSLESEIANLNKQPKVGRIIKKRGLSLREFALTYKSASQIREAESARDNWQKILADPNATVQAKIEATQKLGESLKTKLFTPEQIELVRRKMPDLETLLPTPK

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