Scaffold Ga0315282_10002605

Overview

Basic Information

• Taxon OID: 3300032069
• Scaffold ID: Ga0315282_10002605
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32928
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (96.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008065	Metagenome / Metatranscriptome	339	Y
F081416	Metagenome	114	Y
F085268	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315282_1000260512	F085268	AGGAGG	MSVRNGDKARFGRLRKHRILLRKRLREMRDAMESKTAKAVIAASK
Ga0315282_1000260520	F081416	AGG	MFSHGFRARSQPGHHLAIIEFVRARIDRKYAGLLTLFDRLRRKRNMALYDDSGFVSYHDAAEALRAAHDYLAVIRADINARKP
Ga0315282_1000260528	F008065	AGGAGG	MRKQFVLALGLILVTLASCAFAQQKDEAKTPPQSTPREFAGPPTGGTVTSVGVDRFEIKKMDGSTQTVMVNEHTRYRQGQQDIQIEDLKPGDRVFIRGQANANNEFVAEAVRRVTEEEIQRFQNDGERVFGAIVSIAKNQLRVNNPRQGERTVVVNDQTQFVKEGQPIALKDLKVGDRIFALGKETQGQFLATRIFTGQFRGRGQRRDNQ