Scaffold Ga0315282_10002222

Overview

Basic Information

• Taxon OID: 3300032069
• Scaffold ID: Ga0315282_10002222
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36030
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052399	Metagenome	142	Y
F079632	Metagenome	115	Y
F085040	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315282_1000222211	F085040	GGAG	MAEYLKYGATGLVALIILAVMVPVIRAFVEELKASRQERREMREEHNEFVTNHARHTTEALLQVKDGLEQVCRRLNGSP
Ga0315282_1000222221	F052399	AGGA	VSACFLSAIDGSDPTYLDEGPILYDDGSAERRVSAHATADGRVWQDFGALDVDRQLRLRTDWMSQATLDAFEAKFAVTAQVWKWLDHKGHEYRVFFRALNPERIRGHDAYRVEMVFDVVEVVG
Ga0315282_1000222226	F079632	GGAGG	MTGPTPDDVIMPQERRFLVGEREIVVRPLVIGDYERVAADLGAIAQRIIKEHPEIELTRLDEHLEALFPIIAEWLGRILERLFGVEESYLKEHLTLAQATEIVAAALEVNQLPVIRGNLRRALQVAKATATS