Scaffold Ga0308421_1028379

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308421_1028379

Scaffold Ga0308421_1028379

Overview

Basic Information
Taxon OID	3300032057 Open in IMG/M
Scaffold ID	Ga0308421_1028379 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1759
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043176	Metagenome / Metatranscriptome	156	Y
F074922	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308421_10283791	F043176	AGGAGG	MQTYKIWQGERTFLPGDDTGKFTIIEITGEELGWFEDVIDGKAYYVYQTIGGEVVINIVEQSYGIGEPSRAVIYRFSSLEEAAQSEQRYALEELRLI
Ga0308421_10283794	F074922	N/A	AFKLNSEYIRGEGMIPPATARALAALANEVYLDYVEVDGTAVTLVTREQYADNSERLTVHFPPFACRVLRIESFLPRCTPPHATLLCEAPSLKLVKAARITDFVEIVDEPKRGSELFQRKTPDAKVGYSVRQLREGLRLFRARDSVSVYKNDQGWLSFRDDWGRLFAVTPFVKRD

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