Scaffold Ga0308310_1018246

Overview

Basic Information

• Taxon OID: 3300032056
• Scaffold ID: Ga0308310_1018246
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2418
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011548	Metagenome / Metatranscriptome	289	Y
F020180	Metagenome / Metatranscriptome	225	Y
F026891	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308310_10182462	F011548	GGAGG	MVVISGVELVSGDGLLWAAQRGSERLRLIAYAGVQVRRVGERVYVAHALPMPATRTVRLMPETKYRTLYHLRIDDQHRFGVLPQDAHVWSDSIGGIYASGYAAAQISIISPPAYVSIVRKHKLIYQLHYIALLPSGELREMGTKRDVLLLAKTGEPLALQLAKLLGDYDDFG
Ga0308310_10182463	F020180	GGAGG	MSYDAKRWYITRCSCAKPVLYQDLDRYPLRCAKCGGRVYTEPRPPHFERLRPTPIVDFRAVLRVLGLCALGLLGYILICVYFIVLGGL
Ga0308310_10182465	F026891	N/A	MTIIAGNVVQIDAEDGRLWWAQNGAKRTRLSLYAAQGVHIERVDTEVYVARNAVPVWTGEDWSRQASVYLYPTEKDELYAVWLNTHCGFAVVPEDAVLWEASSFGGPKNSESKIAVLKTGCYVEEYTYKRATPSEWFAITLDGAVRCLGEKSRVIALALRGDKDAKRLAEFKGWLSDLTGELEMRDET