Scaffold Ga0315284_10701325

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10701325
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1189
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_107013252	F045551	AGGAG	MTEQRELELLRPYVAACGEFVTKNAALEKQLKAIDRLLLEVLMGDIDPMQAMINRQKIKDQFDDQH
Ga0315284_107013253	F028744	N/A	MHEFLYECDELGLALKCLFEYEPEEVGSIEPMSGMKLEPDYPEVWTLVSVFLPNSSVDLSGVLHPDVIFRIEQDAPIYFEEMRSNSYD
Ga0315284_107013255	F039000	AGGA	MGKLPETPDKKIEEILDDAQVLLNFCENTFAKPSQAWFACLVSSAILTAELSVPLDKFLEGFEHAYSDAMKAKKDMGASYEH