NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_10652888

Scaffold Ga0315284_10652888


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_10652888 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1245
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014606Metagenome261Y
F100667Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315284_106528881F014606N/AMSTRTNIRTATANALTGALVVPTANILRGRNNTIASISFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFTVESGTYLIDDLFDTGSAAVEAAVLADVTLGGQCRDLHLNSVDYVIEPDEDKR
Ga0315284_106528882F100667N/AYALARLADAAKVDLGLVVKQEAAYVAKAIMQITPPTGDKTKKGATVATVTGGEITKTKASGLSTNAKKQGENAILGDLFGGRNMGKEKSIGLFQRIGNSTEVPPRGGQHETMGVNLGWEASKKIRIYRKFWVKSASIPQMKAFHYANRNERGRPRQVTRSLIGRWAVQDQMWVSNQAANRYLKYTQKKVGLAKAGFAAAAMACGVRVPSWIRRHMTKAGNAQVHFGANPFVVARTTGNQIPDLQRVVDSALKIRYKITISKYRAILANRAVNLGFARVKGGMVIPKET
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