Basic Information | |
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Taxon OID | 3300032053 Open in IMG/M |
Scaffold ID | Ga0315284_10003172 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 23344 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (26.92%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pithoviridae → Pithovirus LCPAC404 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.508 | Long. (o) | -110.3268 | Alt. (m) | Depth (m) | 93 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009382 | Metagenome / Metatranscriptome | 318 | Y |
F010014 | Metagenome | 309 | Y |
F018866 | Metagenome | 232 | Y |
F028091 | Metagenome / Metatranscriptome | 192 | Y |
F046855 | Metagenome / Metatranscriptome | 150 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315284_1000317214 | F046855 | N/A | MSLPAAFVGQQATAMMAISPLDGFLQIFNNNPYFIGLMMLILNLGGRFISLEVTKKQEQFLQHPWVRRVLIFTVLFVATRNIWVAFWATLTFVLFLGYLFNENSALCLFGNEGRTGSTCAEGGPAPGEEMTPEEKEILQRLSAKAQRYQAAGEKGKKTSTKRPDQENLERLLQRNHNDPNLKDTGEPADEEDVLHTDIYAANLTLLKQ |
Ga0315284_1000317215 | F028091 | N/A | MKTPAWLDNLSIHHSSDGVFRVIVVILASVFLVNYSSLFEERYSEKLTELYIHPWWRILVVLLVITSAMWCPRVGIIVAFIVFFYLSDMNTLITPFTNY |
Ga0315284_1000317222 | F010014 | AGAAGG | MAQPVFPDKHTASAYYAFPQPQFITRTRREFDTIDTINARQFEHWQTDGKFGYNNRPDVNSQAPFYDMLPNDSRMNDRSYRSQPRFDASGARGVQNPYFNKYDTTSDARNMTRELRASVYEDKNTGYLDESGKLLQRNFDSRWLNPTVAIQQAAAAEELRPKMDDIRMFYHNKPVSDS |
Ga0315284_1000317224 | F018866 | N/A | MDIHRHKTQKKPVSEPPATEETFKVLLEDSAREAYMRPWHRIERGLRLNRLRIYVEDVAPAHNMTKEEKESFFTYLQRALDKKLLNTLKVVQYSQETQRITAIKGLEVNRQSNGAMRWAFVTKKPRGAEVGTRKKKKDDVLEHMPKIEESLT |
Ga0315284_100031724 | F009382 | N/A | MSDLHEIGFSGNTHPNLFTTPEFGTEYLAARKAALPPAKDVYPARDDRYPAYAGPMADGRLVTDYRPHCSKNIRPDEQYYTKLWMIHHTDEMMDESRRRQVEWSGASLPLANTVPPPADIVHSNAFYSEVNPTHIPTGIGIERANSAAPMLFGTFQYEPTMQEIRNNRKNIALTTRQEGGRNSIRGVIPRPNY |
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