NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_10003172

Scaffold Ga0315284_10003172


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_10003172 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23344
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (26.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pithoviridae → Pithovirus LCPAC404(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009382Metagenome / Metatranscriptome318Y
F010014Metagenome309Y
F018866Metagenome232Y
F028091Metagenome / Metatranscriptome192Y
F046855Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0315284_1000317214F046855N/AMSLPAAFVGQQATAMMAISPLDGFLQIFNNNPYFIGLMMLILNLGGRFISLEVTKKQEQFLQHPWVRRVLIFTVLFVATRNIWVAFWATLTFVLFLGYLFNENSALCLFGNEGRTGSTCAEGGPAPGEEMTPEEKEILQRLSAKAQRYQAAGEKGKKTSTKRPDQENLERLLQRNHNDPNLKDTGEPADEEDVLHTDIYAANLTLLKQ
Ga0315284_1000317215F028091N/AMKTPAWLDNLSIHHSSDGVFRVIVVILASVFLVNYSSLFEERYSEKLTELYIHPWWRILVVLLVITSAMWCPRVGIIVAFIVFFYLSDMNTLITPFTNY
Ga0315284_1000317222F010014AGAAGGMAQPVFPDKHTASAYYAFPQPQFITRTRREFDTIDTINARQFEHWQTDGKFGYNNRPDVNSQAPFYDMLPNDSRMNDRSYRSQPRFDASGARGVQNPYFNKYDTTSDARNMTRELRASVYEDKNTGYLDESGKLLQRNFDSRWLNPTVAIQQAAAAEELRPKMDDIRMFYHNKPVSDS
Ga0315284_1000317224F018866N/AMDIHRHKTQKKPVSEPPATEETFKVLLEDSAREAYMRPWHRIERGLRLNRLRIYVEDVAPAHNMTKEEKESFFTYLQRALDKKLLNTLKVVQYSQETQRITAIKGLEVNRQSNGAMRWAFVTKKPRGAEVGTRKKKKDDVLEHMPKIEESLT
Ga0315284_100031724F009382N/AMSDLHEIGFSGNTHPNLFTTPEFGTEYLAARKAALPPAKDVYPARDDRYPAYAGPMADGRLVTDYRPHCSKNIRPDEQYYTKLWMIHHTDEMMDESRRRQVEWSGASLPLANTVPPPADIVHSNAFYSEVNPTHIPTGIGIERANSAAPMLFGTFQYEPTMQEIRNNRKNIALTTRQEGGRNSIRGVIPRPNY

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