Scaffold Ga0315906_10178240

Overview

Basic Information

• Taxon OID: 3300032050
• Scaffold ID: Ga0315906_10178240
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2024
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F008359	Metagenome / Metatranscriptome	334	Y
F025025	Metagenome	203	Y
F077291	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315906_101782401	F025025	N/A	MSKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKTRIFVDEESVRKYIGEIEVETKMDKLETSLIKNVLSKREKKELIATNVLEGALVSDKLKLDTAYSTYYNGGSINVETTT
Ga0315906_101782405	F077291	N/A	MYNENEITLTMTKKQLKSVVSLMGIALETDCKPMNEMSNKKLENLSILYQVLKDMSKQTK
Ga0315906_101782406	F008359	N/A	MKSKVNVKSNYSIKKVKRVMRMKSENFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKMK
Ga0315906_101782407	F003691	N/A	MTNEFNQFTETAYNTSRNERPIYKNFAATKLSSAVKPQSIVEFKDFMGRTHKVAVRNNTELKKQMKFFAELKKESATIKQIISQYPIKLGKVEKRFIADCKRELKQFGLTKKAIEIVLG