Basic Information | |
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Taxon OID | 3300032050 Open in IMG/M |
Scaffold ID | Ga0315906_10013746 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9284 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (76.19%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010248 | Metagenome / Metatranscriptome | 306 | Y |
F013878 | Metagenome / Metatranscriptome | 267 | Y |
F037227 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0315906_1001374616 | F010248 | GAG | VRKSDRIRLLEMEMLRMQFQIEYLNTAVRLLLDTNKVAGPEMDAGKWYNTKLNKDK |
Ga0315906_1001374618 | F037227 | N/A | MTVLEAIIEEVSLELYQKLWNAIPSEDQTEESSRAVGLNSKETTLFVIQRFMDKFNAAAEELKSQPDEQ |
Ga0315906_100137468 | F013878 | AGG | MLNLTELGVEVFIKKAKNVTPFWDNYDLVIWKKDINGFTNVKGMFKENAWGTAERISVDSDGTWKLPKKHVKHFK |
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