Scaffold Ga0315289_10005600

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10005600
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18525
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (59.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_1000560017	F097281	N/A	MTKQTTPKATPVNLKEQNAAHTFRVTIRDREHFYKLVNWLNANVGKGEDKWTMEGRVLKTLKQGKSVSPKIYVFRQDFDPASSLYLSLL
Ga0315289_100056002	F055453	N/A	MKMKDILNESSTDVVARFYKEASQSYDKFYNPEDAKYKEKNAKYYDDHFKQWFNEEVVPVFTKPVDKPQPEYNHLPKDGKLQSPGYRGLQYALAAAGLPYNHKVQRYEPNASRMIASQTMDAARNNNGQ
Ga0315289_100056007	F071209	AGGAG	MDKNMYVPMNELIRDKDTSWTFTSINLPYYEIAKRGIVIWCVNNLEGRWTMLGGNKFGFEDGTDATMFRMQFGLGI