NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315296_10154520

Scaffold Ga0315296_10154520


Overview

Basic Information
Taxon OID3300032020 Open in IMG/M
Scaffold IDGa0315296_10154520 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1410
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5367Long. (o)-110.4246Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050736Metagenome / Metatranscriptome145Y
F056130Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0315296_101545201F050736AGGAGMAAPTLSHLILTGALIAVIFTVQVFYFYVVDNISSEMLRRELRELTDYVADTIANLYLLLNATNTNPPLEKSLRLPLDVGGSFYALEITRDVSNNAQTVKGMIQGKSWLNVTSWLPRGLKVDVSKTQIIGNSVKPAVAGCQRDTSNVYVWIAYKG
Ga0315296_101545202F056130N/AGIDCSGLQALSSARDTHVGGVSYRSQDGDFLRRLTFLPFLKHNKAASYTLSAMIMTAVTVALVLAAFVYAYQMLEQQRGVSEWEIARKSILAYNDSLENVAWKPGATRSTRFTAQYGYLQLIPNNNNITISATVNGVAQSLPNATYSCKTGIIKYWLSTKYVSFGPGYESYILGNSSSMISSSSDSYGRAVVNQQPGMGMVSMTLDYRVRAMKTAVIDVSGVRTSYVDIWVIKLSMLVSKAWSYVNEFDLQAQALSVTTFSRSFNITSAQTSTISVKIGSVPASQVPITLELGKVVYNVVVADVRVSI
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