NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315324_10294735

Scaffold Ga0315324_10294735


Overview

Basic Information
Taxon OID3300032019 Open in IMG/M
Scaffold IDGa0315324_10294735 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001334Metagenome / Metatranscriptome720Y
F061282Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0315324_102947351F001334N/AMKFKEYLQLNADDSIEQVMDGEWILKSRTTWKATDDEDNTLEIHNDGHDTELQGESWSVHTNTFAPKAFAFFCKQFIKEVKPSEVTHA
Ga0315324_102947352F061282N/ADVLNEDSPTTGMGGGNIATRGIPLLKKPPKGLVMKRFGGIDVFAIDPTHFQKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKYPKKPIIVMDSSTGCMQYLKHGSEK

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