Scaffold Ga0315272_10001332

Overview

Basic Information

• Taxon OID: 3300032018
• Scaffold ID: Ga0315272_10001332
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12295
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F003579	Metagenome / Metatranscriptome	478	Y
F009125	Metagenome	322	Y
F013396	Metagenome	271	N
F016125	Metagenome	249	N
F063471	Metagenome / Metatranscriptome	129	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_1000133212	F063471	N/A	MYTNSAAIFRGDIAGVVEQAKDYEAGLIGVQAMPILDVPVRAGQYPSFVLKEGQLLKSDVKSRAAYSAYARGTRAFNQDTYTALEYGYEEAVDDTVTLDVARFFDAEVIAAKLAKRKLLLAHELRVAAKLFDNTTFTATNSGTAYTTANLATFDVGADVQEATDRLLAKGESVTNLSVIIPYPVWTRIRASTKFQNRLRGAGISSDTILNASQQAAAEVFGVAQVLIGRASYDTAPEGVAFAAGNVWANTFIWVGSVTQASAGFFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASQFTAEKVVNANAGQLITTQYS
Ga0315272_1000133215	F009125	GGAG	MNADNIRATLTAATPAAAMISLSQVNEVAALVGTLLGIAFLLWRWRREAQKKD
Ga0315272_1000133216	F000273	GAGG	MSEEASKHALIEKAAFAVLPILFSCVVYLMSSLASISHEVTVLRQQVSLVVTSDNKQATNTGAELAREKLRQDLEKEIQHNRDMILENRTSIAVITERIGALKK
Ga0315272_1000133219	F013396	N/A	VTLRRSLLLAALALGLVVVLGLALRSERVLTAGLPLRIIVASEAEAWKLAGPSAVVVLGTGSMVPYIPAAPKGADPLRTVCALAVLVPDARYADIKAGALCIYVPVWAGRNVMHQAAQIDAGGWIMTGLGNKSYETTERVTAANFVGIVSRTYIWP
Ga0315272_1000133221	F003579	N/A	MTIPIAPYTMGSPAAPKVGVLFEVRYINYTDRTAVADCHLLDAEGVEIMPVGLVPATAEQCAAWTDDAAFAAVLAVNAGFELVSAE
Ga0315272_100013328	F100667	AGG	MISIFSDTSKLEYALARLADAAKVDTGLVIKQEGAYIAKVMMQIIPPTGDKTKNGKTVPTVTGGTIKLNKASGLSINAKEQGENAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGQNETMGVSLGNEGGKKIRIYRKFWLENASIEQMKSFHHANRNNRGRRKQVTRSAIGRFKVQDQMWISNESADAYLAYVQKSVGLAKAGFAAAAMLGGVRVPSWIRKHMAKAGNAQGHFGVNPFFIARTTGNKIPNLQRVVDGALKIRYKITISKFRAVLANRAVNLGFTRVVGGMPIKSDA
Ga0315272_100013329	F016125	AGGCGG	MAAVRDFDPTQINSDFSAILAQAGVAFTYQGVSVTGIWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPKVTQTLSRASVTYFIERVTLDAEGAGCEISVAKVI