Scaffold Ga0315316_10571144

Overview

Basic Information

• Taxon OID: 3300032011
• Scaffold ID: Ga0315316_10571144
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 946
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014069	Metagenome / Metatranscriptome	266	N
F026154	Metagenome / Metatranscriptome	199	Y
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315316_105711441	F054358	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKITKMHDEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDR
Ga0315316_105711442	F014069	AGGAGG	METVKAPIKERVATKVMPLTKWFVEQYFQTYEMMSSDPRFKKLPAYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE
Ga0315316_105711444	F026154	N/A	FVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDDEYYQTKTKYIRLTKLKEEHEAYRKSRRGNS