Scaffold Ga0318569_10258954

Overview

Basic Information

• Taxon OID: 3300032010
• Scaffold ID: Ga0318569_10258954
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 809
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003418	Metagenome / Metatranscriptome	488	Y
F005651	Metagenome / Metatranscriptome	394	Y
F025580	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318569_102589541	F025580	N/A	AVAAAIAVRVTQGEDVVLIGVQGSPSMGVTITSSDPLRGGRPQWPDGTAEHTSGEGIFVEEIRAALARRGIGFPRVAGETHALASHDEATQRAAIESILDNP
Ga0318569_102589542	F005651	GGA	VKPDERSFRIALVADQFVNPPSGGVDAVAAAAQAGWGVMQLPPGDYPAEVTGPLLAEVAEQVEEFSRHGYAFVVVGGHPGLAESLATVGVAVPDQITPATSVQLIDFLNGRPAPPAAGDLSQIPG
Ga0318569_102589543	F003418	N/A	SVLYVTATKVPDIEASQRTGTFWRVQTDATGLPLLPGRL