NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307416_100610190

Scaffold Ga0307416_100610190


Overview

Basic Information
Taxon OID3300032002 Open in IMG/M
Scaffold IDGa0307416_100610190 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1172
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031859Metagenome181Y
F059744Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307416_1006101901F031859GAGVSWRPEDPRSWGGWHPQDPRWGRHRPTLGWGHPGRPLYDNQLGHRLPTGGPPAAGQLSMLVAIGLFLLSPVTLLAWAAGQAFLRVTGVRWWKLALASLAAIAAVVAVEGGPGPALAHHFSGYVGWLRQIGAAQLDFPTPGAFLWPQLPLA
Ga0307416_1006101902F059744N/ARARPWHAGPEATARDLAALRFVGEHYAARSDVLAAVLGRLSPATPRRVGRLGHRTVRQRVERWEAAGWAVRRRMLDHTWVLPTRAGLRLAGLDFDPWTPALDRLAHHHAVAVVRLAREPVPGQGGWVCERELWRRRGKASWHLADGALPSPIPPDWQGIAAWELVEVELTQKARPRVVAALKTRPPHTARIAYYVPAALLSPLSALLASVVRELGGRPPVTVEPLPQVPGVAYMPLRGEA
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