NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310903_10021591

Scaffold Ga0310903_10021591


Overview

Basic Information
Taxon OID3300032000 Open in IMG/M
Scaffold IDGa0310903_10021591 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2188
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020740Metagenome222Y
F030160Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0310903_100215912F020740N/AMVVGALVIEKIWPREEAKPITMEDKAPVAKEDKAAVDKAVNAGPQTAIGKRGLTPDCEKELRRTADLLRFFANRIQTGEETQSVVADMRQQEKKISAVCD
Ga0310903_100215914F030160N/AMNEKVEQRAPLSVEALRAESYSAADGSIVISLRAKYSTAERMYSVPVECLQALIADLRRLSYLHPQWRQKKPTAQTEPLLPLEPPVAAE

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