Scaffold Ga0315274_10634083

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10634083
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1172
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006653	Metagenome / Metatranscriptome	367	Y
F056431	Metagenome / Metatranscriptome	137	N
F093487	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_106340831	F056431	N/A	VFAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV
Ga0315274_106340832	F006653	AGGAGG	MSEQLSNKYRDNLRVDALSEGTRALQADVDALKVDLTNFIGALLQSGIVELVKDEEGNIIYKINKVVLVDEQPEVQ
Ga0315274_106340834	F093487	AGGAG	MAVAIKPLSHRRRTAQRGKSLSQSQRWGKVVTIMPVPGGEITTTEILVPEVVPVEEVKEDEDN