Scaffold Ga0315274_10354169

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10354169
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1724
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F029678	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_1035416910	F001477	AGGAGG	MSNIYTIHPRKSELILLYEVVDESGRAEWGGASAEQAIQWLTLAPAKARILISAWDSDEEDAHLVGQSI
Ga0315274_103541694	F003212	GGAG	MKDRYLVTLEVETYDGDPRWWDWEKLSTGSDVIKIIETQWKGRVLPTSEGESK
Ga0315274_103541696	F029678	GGAG	MSRVIGFTIFNKETGQKLATLPLTIPIGATVEAYERDGHSVGWGWEESNE