Scaffold Ga0315274_10119591

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10119591
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3393
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F005558	Metagenome	396	Y
F007691	Metagenome / Metatranscriptome	346	Y
F017972	Metagenome	237	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_1011959112	F003863	GGAGG	MESKEVSGRQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIINPDSRLTVGIHTRANNTPAFGDPADAGEDEGNDGGEA
Ga0315274_1011959113	F017972	GGAGG	VKTRHLQLVTHEHLVTTRVRSDVCSPYGPVNPASTTLLAQETLRANQEARLLELLNSLESVVDNLNFKSFTVYDTLVIAMEGVRAALLGTQIEEAGTE
Ga0315274_101195914	F007691	GGAGG	MDTIEQLINEIYEDNYSHLEFNENMGGEDCKCAIHTTLNTIVKYRDERKGE
Ga0315274_101195915	F075748	GGA	MNKQEILAIIDSTDNFNAFIEGMDTLNGQALSLVIDVAGVEGEDWNDEECLETIKEIVDLTNAYKNTHDWND
Ga0315274_101195917	F003212	GGAG	MKDKWLVTIEIDTYDGDPKKWDWDAIFVGEDDITIISSDFKGRVLPTEGEDNE
Ga0315274_101195918	F005558	AGAAGG	MSEDVVMSWSELAELTHATQVERFNWCWCEDNEGQENPYADCPKKESNE